Downloading VigyaanCD and booting your computer with it should be the first step. It comes with ready to use software with quick start instructions and detailed tutorials.
How do I perform molecular dynamics (MD) simulation?
Ghemical is suitable for small systems and for larger systems we provide GROMACS.
How do I create and optimize 3-D coordinates for a small molecule?
I need publication quality pictures of biomolecules. How do I create them?
By using PyMOL.
How do I add text and/or arrows to pictures I already have?
Is there a simple way to convert images from one format to another?
Yes. Use convert command (from Image Magick package) or The GIMP.
>convert inputfile.jpg outputfile.gifHow do I make PDF files?
You will need your document in postscript format (created by print-to-file option) to use ps2pdf utility:
>ps2pdf mydocument.ps mydocument.pdfIf you get errors, make sure that you have postscript drivers installed for your printer and you need to have .ps extension in your filename.
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